Patrick H. Bradley

Latest

• Adaptive adjustment of significance thresholds produces large gains in microbial gene annotations and metabolic insights
• Framework for exploring the sensory repertoire of the human gut microbiota
• Host and gut bacteria share metabolic pathways for anti-cancer drug metabolism
• phylogenize: correcting for phylogeny reveals genes associated with microbial distributions
• Minor isozymes tailor yeast metabolism to carbon availability
• Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
• Proteobacteria explain significant functional variability in the human gut microbiome
• Automated and accurate estimation of gene family abundance from shotgun metagenomes
• Phylogenetic portrait of the *Saccharomyces cerevisiae* functional genome
• Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations