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Genomics
Human xenobiotic metabolism proteins have full-length and split homologs in the gut microbiome
Xenobiotics, including pharmaceutical drugs, can be metabolized by both host and microbiota, in some cases by homologous enzymes. We …
Matthew Rendina
,
Peter J. Turnbaugh
,
Patrick H. Bradley
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Minor isozymes tailor yeast metabolism to carbon availability
Isozymes are enzymes that differ in sequence but catalyze the same chemical reactions. Despite their apparent redundancy, isozymes are …
Patrick H. Bradley
,
Patrick A. Gibney
,
David Botstein
,
Olga G. Troyanskaya
,
Joshua D. Rabinowitz
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Automated and accurate estimation of gene family abundance from shotgun metagenomes
Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial …
Stephen Nayfach
,
Patrick H. Bradley
,
Stacia K. Wyman
,
Timothy J. Laurent
,
Alex Williams
,
Jonathan A. Eisen
,
Katherine S. Pollard
,
Thomas J. Sharpton
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Coordinated concentration changes of transcripts and metabolites in *Saccharomyces cerevisiae*
Metabolite concentrations can regulate gene expression, which can in turn regulate metabolic activity. The extent to which functionally …
Patrick H Bradley
,
Matthew J Brauer
,
Joshua D Rabinowitz
,
Olga G Troyanskaya
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