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Phylogenize2: robust phylogenetic methods link genes to phenotypes across host-associated and environmental microbiomes
In microbiome studies, associations between microbial functions and the environment are often confounded by phylogeny. While some …
Kathryn Kananen
,
Nghi Tran
,
Patrick H. Bradley
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A robust, sensitive phylogenetic method enables gene-level metagenomic analyses
A key goal in the microbiome field is to move from taxonomic associations towards mechanistic hypotheses about microbial gene function. …
Nghi Tran
,
Kathryn Kananen
,
Patrick H. Bradley
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Berry Supplement-Modified Human Microbiome Improves Immunotherapy Response in Mouse Models
Cancer outcomes have improved with immune checkpoint inhibitor (ICI) treatment; however, less than half of tumors respond. Emerging …
Shiva Jahanbahkshi
,
Amna Bibi
,
Rebecca Hoyd
,
Caroline Dravillas
,
Nyelia Williams
,
Shiqi Zhang
,
Aaditya Pallerla
,
Shankar Suman
,
Joseph Amann
,
Mounika Goruganthu
,
Tamio Okimoto
,
Yangyang Liu
,
Marisa A. Bittoni
,
Ni Shi
,
Alvin Anand
,
Bailey Conrad
,
Lane Nevers
,
Kristen Heitman
,
Maxine Webb
,
Elizabeth M Grainger
,
Madison Grogan
,
Christian Quiles
,
Tong Chen
,
Carolyn J. Presley
,
Lang Li
,
Patrick Bradley
,
Yael Vodovotz
,
David P. Carbone
,
Steven K. Clinton
,
Jiangjiang Zhu
,
Daniel Spakowicz
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